p3-project-subsystems

Project Subsystems onto MAAGE Genomes

p3-project-subystems.pl [ options ] outDir genome1 genome2 ... genomeN

This script will examine MAAGE genomes and project subsystems onto them. The resulting GTOs will be output to the specified output directory.

Parameters

The positional parameters are the name of the output directory followed by one or more MAAGE genome IDs.

The command-line options are the following:

• roleFile

Name of a tab-delimited file containing [role checksum, subsystem name] pairs.

• variantFile

Name of a tab-delimited file containing in each record (0) a subsystem name, (1) a variant code, and (2) a space-delimited list of role checksums.